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This database is supported by the National Science Foundation (NSF) and the University of Missouri.

Department of Computer Science, Department of Plant Microbiology and Pathology, and National Center for Soybean Biotechnology, University of Missouri, Columbia    soybean

To cite SoyDB:

Zheng Wang, Marc Libault, Trupti Joshi, Babu Valliyodan, Henry Nguyen, Dong Xu, Gary Stacey, and Jianlin Cheng, SoyDB: A Knowledge Database of Soybean Transcription Factors, BMC: Plant Biology 2010, 10:14. [PDF] [HTML]

The information stored in this database includes:

  • Amino acid sequences
  • Predicted tertiary structures
  • DNA binding sites
  • Domain predictions
  • Homologous proteins from the Protein Data Bank
  • Protein family classifications
  • Multiple sequence alignments
  • Consensus DNA binding motifs and web logo of each family

The main functions of this database are:

  • Full text search
  • PSI-BLAST sequence search
  • Database browsing by protein family
  • Automatic classification of a new protein sequence into one of 64 annotated transcription factor families by Hidden Markov Model
Home Page Text Search PSI-BLAST Search Browse Database Family Prediction by HMM FTP People